Connectivity Analysis Toolkit License Version history Getting Started Overview of Methods Three Methods for Connectivity Analysis Subset Centrality: Mapping Linkages All-pairs Centrality: Mapping Landscape Connectivity Network Flow Analysis of Time Series Input files Output files Running the Toolkit from the GUI Hexmap Tab Graphs Tab Connectivity Tab Output Tab Running the Toolkit from the Command Prompt Flowchart of analysis process Examples Example 1: Shortest-path betweenness centrality (BC) Example 2: Shortest-path betweenness subset centrality Example 3: Comparison of subset and all-pairs current flow BC Example 4: Comparison of shortest-path and current flow BC Tutorial Exercise 1 - Mapping linkages with min-cost-max-flow subset centrality Exercise 2 - Mapping linkages with shortest-path subset centrality Exercise 3 - Mapping landscape connectivity with all-pairs centrality Exercise 4 - Mapping connectivity under climate change: analysis of time series Troubleshooting Related Resources System requirements Contacts & Credits
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# Contacts & Credits Website: http://www.connectivitytools.org Support and discussion forum: http://groups.google.com/group/connectivitytoolkit?hl=en Or send support questions to the CAT developer at: klamathconservation@gmail.com Model design by Carlos Carroll and Brad McRae. Software development by Allen Brookes, Kevin Djang, Nathan Schumaker, and Carlos Carroll. The developers of the Connectivity Analysis Toolkit are grateful to the participants in the NCEAS Connectivity Working Group, especially P. Beier, S. Phillips, R. Pressey, N. Schumaker, D. Theobald, and to V. Shah, for comments and suggestions. Connectivity Analysis Toolkit is based in part on portions of the following software modules: Hexsim, developed by Nathan Schumaker et al.: http://www.epa.gov/hexsim LEMON, developed by the Egervary Combinatorial Optimization Research Group, http://lemon.cs.elte.hu/ NetworkX, developed by Aric Hagberg et al.: http://networkx.lanl.gov/ Python, developed by Guido van Rossum et al.: www.python.org
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