1
 Connectivity Analysis Toolkit
 app.htm
2
 License
 ordering.htm
3
 Version history
 module_2.htm
4
 Getting Started
 getting-started.htm
5
 Overview of Methods
 module_4.htm
6
 Three Methods for Connectivity Analysis
 module_4_1.htm
7
 Subset Centrality: Mapping Linkages
 module_4_2.htm
8
 All-pairs Centrality: Mapping Landscape Connectivity
 module_4_3.htm
9
 Network Flow Analysis of Time Series
 module_4_4.htm
10
 Input files
 module_5.htm
11
 Output files
 module_6.htm
12
 Running the Toolkit from the GUI
 application-user-interface.htm
13
 Hexmap Tab
 module_7_1.htm
14
 Graphs Tab
 module_7_2.htm
15
 Connectivity Tab
 module_7_3.htm
16
 Output Tab
 module_7_4.htm
17
 Running the Toolkit from the Command Prompt
 module_8.htm
18
 Flowchart of analysis process
 module_9.htm
19
 Examples
 module_10.htm
20
 Example 1: Shortest-path betweenness centrality (BC)
 module_10_1.htm
21
 Example 2: Shortest-path betweenness subset centrality
 module_10_2.htm
22
 Example 3: Comparison of subset and all-pairs current flow BC
 module_10_3.htm
23
 Example 4: Comparison of shortest-path and current flow BC
 module_10_4.htm
24
 Tutorial
 module_11.htm
25
 Exercise 1 - Mapping linkages with min-cost-max-flow subset centrality
 module_11_1.htm
26
 Exercise 2 - Mapping linkages with shortest-path subset centrality
 module_11_2.htm
27
 Exercise 3 - Mapping landscape connectivity with all-pairs centrality 
 module_11_3.htm
28
 Exercise 4 - Mapping connectivity under climate change: analysis of time series
 module_11_4.htm
29
 Troubleshooting
 module_12.htm
30
 Related Resources
 related-resources.htm
31
 System requirements
 system-requirements.htm
32
 Contacts & Credits
 contacts.htm
